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發現新生命基石-K. Sheridan
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NASA finds new form of life... on Earth

Kerry Sheridan (法新社)

WASHINGTON (AFP) – Bacteria that thrive on arsenic have been scooped from a California lake, a discovery that redefines the building blocks of life and offers new hope in the search for other organisms on Earth and beyond.

Not only do the bacteria survive, they grow by swapping phosphorus for arsenic in their DNA and cell membranes, said the study funded by the US space agency NASA and published Thursday in the journal Science.

The findings add a new dimension to what biologists consider the necessary elements for life, currently viewed as six elements: carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur.

"What we've found is a microbe doing something new -- building parts of itself out of arsenic," said scientist Felisa Wolfe-Simon, a fellow in NASA's astrobiology program who made the groundbreaking discovery at Mono Lake in eastern California.

"There's an organism on Earth doing something different," said Wolfe-Simon. "We've cracked open the door to what's possible for life elsewhere in the universe. And that's profound."

Ariel Anbar, a co-author of the study, explained how Wolfe-Simon was able to get the bacteria known as strain GFAJ-1 of the Halomonadaceae family of Gamoproteobacteria to grow under extreme toxic conditions in the lab.

"She takes this sediment, puts it in a bottle essentially where there is lots of arsenic and very little phosphorus, and she does it over and over so only organisms that are going to be happy in that environment survive," said Anbar.

"The organism came from nature," said Anbar, a scientist at Arizona State University's School of Earth and Space Exploration. "It is a known bacteria. It is not a brand new bug but nobody realized it could do this," he said.

Scientists have known for some time that some microbes can use arsenic for energy, much like humans do with oxygen or food.

"The way I like to put it is they smoke it but they don't inhale it," said Paul Davies, a co-author of the paper and British-born cosmologist at Arizona State University.

"So the big question we all wanted to know was where has the arsenic gone? Is the arsenic really in their innards?

"Eventually, bit by bit, the evidence accumulated that indeed the arsenic was in the DNA, the proteins, the lipid membranes and the metabolites, so it was everywhere where it is important."

A few years ago, Wolfe-Simon, Anbar and Davies began discussing the idea that different life forms could exist on Earth but by biological rules unlike ours, a notion known informally by scientists as "weird life."

The trio published in 2009 their hypothesis that arsenic, which is directly below phosphorus on the periodic table, could substitute for phosphorus in Earth life forms.

"We conjectured that maybe life started via the arsenic route and phosphorus was the later adaptation," said Davies, noting that they still are not sure which came first, or if this bacteria could be "like a living fossil, a hangover from an earlier arsenic epoch."

But the discovery has made him think about all the forms of life out there that scientists may have missed.

"This is going to open up a whole new line of inquiry. First of all this can't be the only arsenic organism on the planet, there is going to be a lot more, so this is a whole new domain of microbiology that it represents," said Davies.

"Who knows what else is out there if we take a harder look?"

The findings, leaked early in a vague but intriguing announcement by NASA that mentioned "extraterrestrial life," lit up the blogosphere and stunned many scientists.

Arizona State University professor James Elser said he has spent years telling students that phosphorus was a necessary part of DNA.

"The idea that I am sitting here today discussing the idea that this is not true is shocking," said Elser, a panelist at a NASA press conference on the discovery.

Caleb Scharf, a Columbia University astrobiologist, told The New York Times he was amazed.

"It's like if you or I morphed into fully functioning cyborgs after being thrown into a room of electronic scrap with nothing to eat," he said.

NASA has conducted numerous probes at eastern California's Mono Lake, an unusually salty body of water with high arsenic and mineral levels, as it is likely to reflect conditions under which early life evolved on Earth, or perhaps Mars.

"Sometimes you think something is not going to work, but then you go looking for it and sometimes you may find it," said Anbar.

"And then you realize, oh, I didn't understand things quite as well as I thought I did before. And that happens all the time in science. That's part of what makes it fun."

http://news.yahoo.com/s/afp/20101203/ts_alt_afp/scienceusspaceastrobiologybiology

 



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Debate Reignited Over Claim of Arsenic-Based Life

Clara Moskowitz, LiveScience senior writer

One of the more heated scientific debates of recent years has been stirred up again with the publication of new criticisms of the reported finding of "arsenic life."

The prestigious journal Science published the criticisms today (May 27) along with a defense of the study, which Science had posted online this past December.

A team of researchers led by Felisa Wolfe-Simon of NASA's Astrobiology Institute had studied bacteria collected from California's Mono Lake and reported finding evidence that these microorganisms were substituting the poisonous molecule arsenic for the phosphorous usually used to build DNA.

The discovery stood to overthrow scientists' understanding of the basic requirements for life.

Igniting a firestorm

The December report in Science was immediately met with skepticism from other scientists, as the journal noted today.

"Science received a wide range of correspondence that raised specific concerns about the Research Article's methods and interpretations,"  editor-in-chief Bruce Alberts wrote.

Others put it more bluntly: "The paper was harshly criticized for its lack of controls and unjustified conclusions," zoologist Rosemary Redfield of Canada's University of British Columbia wrote on her blog today.

Redfield wrote one of eight "technical comments," pointing out potential errors in the findings, that were published today by Science. [Q&A: 'Science' Journal Official Talks Arsenic-Based Life]

"These post-publication responses are an essential part of the process by which science moves forward, correcting itself when necessary," according to a statement from Science. "We hope that the study and the subsequent exchange being published today will stimulate further experiments — whether they support or overturn this conclusion. In either case, the overall result will advance our knowledge about conditions that support life."

Along with the criticisms, Science published a response from Wolfe-Simon and her colleagues, who say they stand by their findings and are not discouraged by the arguments against their research.

"We welcome the opportunity to better explain our methods and results and to consider alternative interpretations," Wolfe-Simon and her team wrote. "We maintain that our interpretation of [arsenic] substitution, based on multiple congruent lines of evidence, is viable."

Feeding on poison

The researchers studied a strain of bacteria called GFAJ-1. These bacteria are normally exposed to high doses of arsenic in Mono Lake.

To test whether the microbes had evolved to use the arsenic in any way, Wolfe-Simon and her colleagues tried to grow some in laboratory cultures containing only trace amounts of phosphorous. In one set of cultures, the researchers added arsenic and observed that the bacteria were thriving. In a control culture with the same small amount of phosphorous, but where no arsenic was added, the bacteria did not grow.

The researchers conducted further tests, including an analysis of the organisms' DNA, which appeared to contain arsenic. The scientists concluded that GFAJ-1 was substituting arsenic in place of phosphorous when building its DNA.

Although arsenic is typically toxic to life, its chemical properties are similar to those of phosphorous. Phosphorous is thought to be one of six elements ?along with oxygen, carbon, hydrogen, nitrogen and sulfur ?essential for life.

If it turns out that arsenic can be subbed in for phosphorous, it opens up a whole new set of possibilities for the basic requirements of life.

Pointing out problems

Detractors of the claim say there are various flaws in the Wolfe-Simon team's logic.

Redfield questions whether the researchers had done enough to eliminate possible phosphorus contamination in their cultures, and suggested that more than trace amounts of phosphorous (enough to feed the bacteria) were available to the bacteria in the lab tests.

Another problem, according to Steven Benner at the Foundation for Applied Molecular Evolution in Gainesville, Fla., is that the form of arsenic that would be present in DNA — a compound called arsenate esters — should dissolve in water, rendering it unstable in DNA.

In their response, Wolfe-Simon and her colleagues acknowledged Benner's concern but suggested that in large biomolecules like DNA, arsenate esters might be more stable than thought.

And Barbara Schoepp-Cothenet from the Bioénergétique et Ingénierie des Protéines in Marseilles, France, argued that arsenic would likely be reduced to a different compound called arsenite in the environment of a cell. While arsenic does have similar properties to phosphorous, arsenite does not, and should not be able to mimic phosphorous' functions in DNA, she said.

But the researchers said they had seen no evidence of arsenite in their follow-up studies of the bacteria growing in the cultures.

Unresolved

Ultimately, the case is far from settled.

The Wolfe-Simon team has offered to provide samples of the GFAJ-1 bacteria to other researchers for their own testing.

Alberts, Science's editor-in-chief, said, "We recognize that some issues remain unresolved. However, the discussion published online today is only a step in a much longer process."

You can follow LiveScience.com senior writer Clara Moskowitz on Twitter @ClaraMoskowitz. Follow LiveScience for the latest in science news and discoveries on Twitter @livescience and on Facebook.

7 Theories on the Origin of Life 

Extremophiles: World's Weirdest Life

Strangest Places Where Life Is Found on Earth

http://news.yahoo.com/s/livescience/20110527/sc_livescience/debatereignitedoverclaimofarsenicbasedlife

 

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淺談生命起源
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麥芽糖

就我的了解:

我們通稱的「生命」,是地球上這個或那個生物所進行活動的總和。

我們一般所了解的「生物」來自我們一般所了解的「無生物」。「無生物」有兩種:「無機物質」和「有機物質」。

某些無機物質在一定的物理和化學情況下,(隨機)形成有機物質中的氨基酸類分子。有位生化學家Stanley Miller1953年發表了這個轉變的實驗報告;但他的實驗一直有爭議。Discover上那篇文章有比較詳細的介紹(Grant 2010, 文需在網上訂閱,或在圖書館中找到11/2010期刊);我手頭則有一本相當舊的書:The Mystery of Life’s Origin: Reassessing Current Theories, 1984,也介紹了此實驗;或參考wikipedia”Stanley Miller”條目所附資訊。

某些氨基酸分子在一定的物理和化學情況下,(隨機)形成肽和蛋白質等等;另一類有機物分子在一定的物理和化學情況下,(隨機)形成RNADNA。它們在一定的物理和化學情況下,(隨機)合成或演變成生物學家稱為「單細胞」的物質。單細胞有沒有「生命」?這是一個生物學家現在還沒有定論的議題(Moskowitz 2010)

單細胞生物逐漸演變成多細胞的生物;在這個演變過程中的某一個階段或時間點,產生了我們稱為「生命」的現象。

這大致是目前生物學中關於(地球)「生命」起源的「標準理論模型」。如有錯誤,歡迎指正。

Stanley Miller的實驗指出:

地球的環境可以提供「無機物變成有機物的『可能性』」;或「無機物變成有機物的『條件』」。

Choi的報導則在指出:

「慧星可能是地球獲得水和有機物的『來源』。」(Choi 2010)

換句話說,不論地球本身的條件能不能產生「有機物質」,慧星可能提供了產生「生命」所需的成分(不是「生命」本身)。有了這些成分,地球生態則提供上述「生命」發展或演變的「環境」或「條件」。

至於「宇宙中(地球以外其他)『生命』的起源?」這個議題,我認為要先確認「宇宙中『有』(地球以外其他) 『生命』的存在。」這個命題後,才有可能去研究該生命的起源。而唯一能確認這個命題的情況,是我們看到一個「地球生命」以外的「生命」(形式)。事實上,在確認這個命題之前,我們可能需要先確認「(地球以外其他)『生命』」個概念指什麼而言。目前我們只看到地球上的「生命」。因此,我們只知道地球上「生命」的形式。從而,我們(目前)可以先研究,也只能研究地球上「生命」的起源和它的性質。如果宇宙中「有」地球生命以外其他的「生命」,我們可能面對它而不認識它,甚至覺察不到它。同理,我們可能自認為覺察或認識到地球生命以外的「生命」,但那其實只是一個錯覺或幻覺。

我並不否認宇宙中有(地球以外其他)「生命」的可能性。我只是認為在看它到時,或我們能用其他感官或儀器(一再的)探測到它時,研究它的形式和/或起源才可能有一個有意義的結果。有興趣的人當然可以去思考「宇宙中(地球以外)『生命』的形式和/或起源」這個議題。但由於沒有一個具體對象可以驗證或反證這個「思考」的結果,這個思考就只能做個參考,我們無法針對它進行一個可能取得「共識」的討論。

參考文章:

* Choi, C. Q. 2010, How Earth May Owe Its Life to Comets (慧星是生命之源?)https://city.udn.com/2976/4256738?tpno=1&cate_no=52524

* Grant, A. 2010, Cosmic Blueprint Of Life, The Discover Magazine, November Issue, 2010

* Moskowitz, C. 2010, Life's Great Mystery: What, Exactly, Is Life? (到底什麼是生命?), https://city.udn.com/2976/4326936#rep4326936

其他相關報導:

* Fox, S. 2010, Synthetic Life May Reveal Origins of Natural Life (合成生命的科學應用), https://city.udn.com/2976/3987789#rep3987789

* Macintosh, Z. 2010, New Theory for Life's First Energy Source (生命能源的新理論), https://city.udn.com/2976/4011105#rep4011105

http://www.livescience.com/animals/synthetic-genome-origin-of-life-100524.html

* Neergaard, L. 2010, A step to artificial life: Manmade DNA powers cell (下一步:人造生命), https://city.udn.com/2976/3983384

(本文原為與朋友討論生命起源。)



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科學家還有很多新發現等待他們!
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麥芽糖
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也許這個發現 像下面幾個重要的發現:

哥白尼發現地球是圓的

蒸汽機代替馬

機器代替人力

但是: 科學家還有很多新發現等待他們!


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重點在這是新發現
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麥芽糖

這個發現在"方法"上有爭議

因此需要進一步研究

但這是第一次科學家"發現"在已知元素外

生物可以靠Arsenic存活(見開欄文 其他生物如人 吃了會被"毒死")

如果此實驗被其他科學家嚴謹的複製

這將改變"生命"的定義(見"到底什麼是生命?"一文)

這是此發現重要之處

其重要性不在我們知道生物可以使用不同的物質做食物

而在以前我們從來"不知道"Arsenic"可以"做某些生物的食物



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大驚小怪的美國太空中心NASA
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呵呵!

換個環境, 就吃不同的食物!

麥芽糖在臺灣吃白米飯長大. 到了美國, 換吃麵包. 也要說是新發現的生命基石?


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到底什麼是生命? -- C. Moskowitz
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Life's Great Mystery: What, Exactly, Is Life?

Clara Moskowitz, LiveScience Senior Writer

In the wake of controversy over the possible discovery of arsenic-eating life last week - a finding that could expand the bounds of what scientists think life is capable of - a basic question perhaps deserves revisiting:

Just what, exactly, is life?

"We don't have a very good definition of life," said researcher Christopher Voigt of the University of California, San Francisco, who works on synthetic biology. "It's a very abstract thing, what we call life, and at what point we say something doesn't have the necessary components versus it does, it just becomes way too murky."

The question of what constitutes life has dogged scientists since the early days.

Working toward a definition

Aristotle was the first to attempt to define life, and his proposal boils down to life being something that grows and maintains itself (he called this "nutrition"), and reproduces.

In 1944, Austrian physicist Erwin Schrödinger defined life as that which resists decaying to disorder and equilibrium. This definition relates to the second law of thermodynamics, which states that closed systems will naturally gain entropy, or disorder, over time. Essentially, like a teenager's room, without any help from mom, it will inevitably get messier. But by taking in nutrients and metabolizing them, living things can work against this trend.

However, this definition would mean that crystals, which take in energy and create order when they form elaborate lattices of particles, count as life.

This is the problem with most proposed definitions of life: They tend of have loopholes.

For example, some have proposed that life is that which can reproduce itself. However, that definition would exclude mules, which are born sterile, and would include nonliving things like fire.

Others have suggested that life is something that can metabolize - that is, take in energy to move or grow, and release waste - but many nonliving things, like cars, can do that.

"Life, because it is such a complex system of things with so many interacting parts, each of which is essential, it's really tough to make a definition," said biochemist David Deamer of the University of California, Santa Cruz.

Despite the difficulty of pinning down life, some scientists aren't content to give up, saying a working definition of life is necessary if we are to identify living things beyond Earth. In that case, the adage, "You'll know it when you see it" just doesn't cut it.

But maybe we can find extraterrestrial life without knowing what it is.

"The practical approach to the search for life is to determine what life needs," wrote astrobiologist Chris McKay of NASA's Ames Research Center, in a 2004 paper in the journal PLoS Biology. "The simplest list is probably: energy, carbon, liquid water, and a few other elements such as nitrogen, sulfur and phosphorus."

Arsenic-eating life

That's where discoveries like the recent arsenic finding come in. A team of researchers led by Felisa Wolfe-Simon of NASA's Astrobiology Institute announced Dec. 2 that they'd found a kind of bacteria that can use arsenic in the place of phosphorus to build its DNA. The organism was unearthed in California's Lake Mono.

Thus the discovery seems to negate the last requirement on McKay's list (phosphorus), and opens up the field to a wider array of habitats that could support alien life.

Yet since the finding was announced, other scientists have questioned the researchers' methods, wondering whether the arsenic was really being incorporated into the microbe's DNA, and if there was a chance trace amounts of phosphorus were available to the bacteria.

Whether or not this discovery holds weight over time, it's possible that some of scientists' basic assumptions about what life is and what it requires to survive will need to be revised.

And the quest to understand life is inextricably twined with the search for extraterrestrial life. Some scientists maintain that we likely won't be able to define life until we discover more of it beyond Earth.

"We won't come up with an adequate account of life until we have examples of life as we don't know it," said Carol Cleland, who studies the philosophy of science at the University of Colorado, Boulder. "We have a single example of life, and you just can't generalize on the basis of a single example."

Give it up

And some experts contend that the never-ending quest to come up with the ultimate definition of life misses the point.

"I don't think definitions are the right way to go," Cleland told LiveScience. "People tend to make definitions when they lack theories and they want to understand something. All this insistence on defining life strikes me as a sure sign that we really don't have a good theory of life."

Cleland likened the situation to early scientists trying to define water before they understood chemistry. It took the discovery of the elements hydrogen and oxygen for scientists to understand water as a compound of the two.

Rather than focusing on definitions, scientists should work on broadening their conceptions of what life is in order to build up a theory of life, she said.

She compared it to the quest to understand matter in motion. Early scientists focused on properties like volume, weight or impenetrability to define matter. It wasn't until the late 16th century that the concept of matter as inertial mass - something that resists a change in motion - was proposed. That concept was what allowed Isaac Newton to formulate his three laws of motion.

"Suddenly we had this important theory of physics," Cleland said. "You've got to start with the right concepts in order to formulate theories."

Limiting life to a strict definition at this point could hamper the quest to understand life.

"I think definitions can actually serve more to hinder than advance scientific knowledge, and they can blind us to exceptions to the rule," she said.

And some scientists are content to let the matter rest for a while.

"For what we do, [a definition of life] is unnecessary," Voigt said. "It's sort of like a lot of big questions in science: 'Where are we from? How did the universe get created?' These are big questions that we'll probably never be able to solve. But not knowing what life is doesn't change our ability to engineer it."

Ultimately, some experts are hopeful that a definition of life will eventually be possible.

"It's not futile - we're still adding up the parts," Deamer said. When scientists know enough to be able to recreate life from scratch, then they'll know enough to define it, he said.

http://news.yahoo.com/s/livescience/20101211/sc_livescience/lifesgreatmysterywhatexactlyislife



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"And then you realize, oh, I didn't understand things quite as well as I thought I did before. And that happens all the time in science."
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