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Life's Origin May Have Been a Shallow Affair

Anuradha K. Herath, Astrobiology Magazine, LiveScience.com 

In finding answers to the mystery of the origin of life, scientists may not have to dig too deep. New research is shedding light on shallower waters as a possible location for where life on Earth began.

Hydrothermal vents have been a focus of origin of life studies ever since the first one was discovered in 1977. These were mainly deep vents that averaged 2,100 meters [1.3 miles] down on the ocean floor. The hot gasses emanating from the center of the Earth through these vents could reach temperatures greater than 300 degrees Celsius.

These high temperatures caused some scientists to reject the possibility that life originated at deep sea hydrothermal vents, since organic molecules are unstable at such high temperatures.

In a paper published in the November issue of the journal Astrobiology, scientists point to shallow hydrothermal vents, at depths of 200 meters [656 feet] or less, as a possible location where the first signs of life emerged.

"Shallow water hydrothermal vents have been dismissed," says lead author Marcelo Guzman, origins of life postdoctoral fellow at the School of Engineering and Applied Sciences and Department of Earth and Planetary Sciences at Harvard University. "There are plenty of shallow hydrothermal thermal vents but they have been studied less."

The shallow depth makes it possible for the sun's energy to reach the vents. Depths of 200 meters or less consist of the "photic zone," regions of the ocean through which sunlight can penetrate, providing the required energy for chemical reactions. Sunlight is completely filtered out at depths beyond 200 meters. Temperature is also a factor.

"Shallow hydrothermal water systems are more temperate," says Guzman.

In shallow hydrothermal vents, temperatures range from 10 to 96 degrees Celsius, much milder than those of deep hydrothermal vents.

Shallow hydrothermal vents aren't that common today, but they were probably more prevalent about four billion years ago when the Earth's mantle had just cooled enough to form. There may have been less water on Earth at that time as well, since many scientists believe a majority of Earth's water was delivered after formation, by asteroids and comets.

The earliest examples of ancient life are stromatolites - pillars of rock created by microbial mat colonies. Stromatolites are rare today, but usually form in shallow water. It would be a case of straight-forward evolution if the ancient stromatolites formed in the same environment where life itself was born.

Starting the Cycle

Scientists who study the origin of life tend to fall into one of two camps - geneticists or metabolists. Proponents of the "metabolism first" view believe that complex chemical reactions provided the environment from which a genetic system developed. The supporters of the "genetics first" theory argue that replicating polymers came first and made way for metabolism through evolution.

Though Guzman promotes the "metabolism first" perspective, he also believes there were "several mechanisms happening simultaneously, and the first original cell had both genetics and metabolism."

Assuming that is true, there are three requirements for a primitive metabolism: energy, a mineral catalyst and a perpetuating chemical cycle.

The energy for the shallow hydrothermal environment would have been provided by sunlight and the temperate heat of the vents. The mineral catalysts would have been part of the rocks that made up the vent structures. The perpetuating chemical reaction that Guzman and his colleague, Scot Martin, imagine to have existed on early Earth is the reverse Krebs cycle (also called the reductive tricarboxylic acid (rTCA) cycle or the reductive citric acid cycle), which uses carbon dioxide and water to make carbon compounds.

Even though the Krebs cycle is one of the most basic cycles life can use to "fix" carbon, Guzman says, it is still complex because specific enzymes work during each step. Guzman does not believe that enzymes existed before life originated, and therefore the Krebs cycle most likely evolved from something even more primitive.

"We're talking about prebiotic metabolism," Guzman says. "Maybe metabolites in the environment allowed the first cells to have the chemistry they needed to run. Maybe in the first cell, a mineral catalyzed certain reactions."

Guzman and Martin tried to chemically replicate the Krebs cycle - that is, without enzymes playing a role. They experimented with the semi-conducting mineral zinc sulfide as the catalyst. But iron, cadmium and manganese can also be used, says Guzman. Using a "colloidal suspension" (a chemical mixture in which a solid is suspended in a liquid) of zinc sulfide and sodium sulfide and exposing it to UV light, the research team was able to reproduce about 70 percent of the cycle.

"The inevitability of certain compounds appearing again and again kind of links to what people have been thinking about - the core metabolism as being the essential starting point," says George Cody, senior research scientist at the Carnegie Institution of Washington.

Cody says he views this research study very favorably, and even though the finding is "not a quantum leap" in this area of research, "it's an interesting bit of chemistry," he says.

"It's a set of experiments that other people aren't doing," Cody says. "It highlights how much work needs to be done. There are many different environments where one can simulate experiments, but there's a lot more to the story than just that. One has to link reliable chemistry with geochemical reality."

In future research, Guzman hopes to be able to accurately simulate the chemical conditions of a hydrothermal vent in the lab.

Leslie Mullen contributed additional reporting for this article.

http://news.yahoo.com/s/livescience/20091222/sc_livescience/lifesoriginmayhavebeenashallowaffair



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Complex Life Emerged from Sea Earlier Than Thought

LiveScience.com 

Life on Earth began in the oceans, but new fossils are showing that complex algae-like organisms left these salty seas earlier than thought, about 1 billion years ago, and spent more time evolving on land.

"Most of the time we assume that life originated in the oceans, that the primary divisions and the events of evolution took place there," study researcher Paul Strother, of Boston College, said. "The fact we are finding this complexity and diversity means that the eukaryotes probably had some history of evolution in the freshwater." [Extremophiles: World's Weirdest Life]

For about 2.5 billion years land had been colonized by very simple life, the cyanobacteria. These bacteria don't have specialized compartments within their cells, but they are able to turn sunlight into energy and oxygen, which paved the way for more complex, multicellular life.

Eukaryotic emergence

This complex life is the domain of life called the eukaryotes, which gave rise to all the animals (including humans), plants, fungi and single-celled animals like protists. These organisms have a more complex structure than the other domains (bacteria and archaea). They have their genetic code, engines, processing plants and trash bins segregated in separate compartments.

They also likely had sex — reproduced by mixing their genomes together, which most eukaryotes do — and many might have created their own energy from the sun. "In some cases they are going to be displacing things that are already there and in other cases they would be adding a tier to what already existed," Strother told LiveScience.

The microfossils show features indicating they had this complex organization within their cells. Some were also aggregates of multiple cells, or had extensions. Many of them were able to synthesize energy from the sun, but it's possible that some were animal-like organisms as well, able to feed on the algae-like organisms.

Freshwater free-for-all

Eukaryotes were already abundant in the seas, but living in freshwater and on land is a much different environment. They had to deal with quickly changing conditions in these habitats. "This also includes environments that are drying up, that are nutrient poor, like lakes, rivers and streams," Strother said. "The range of different environments is much greater on land than it is in the ocean, so theoretically there would be more stimulation for speciation that would be occurring."

These freshwater eukaryotes probably came from their oceanic brethren, but the fossil record for these microorganisms is so spotty, it's hard to tell, Strother told LiveScience. Strother’s team is continuing to sort through samples of microfossils for more examples of the types of complex life that lived at this time.

"We know very little about life in non-marine realms. Strother and colleagues have demonstrated that eukaryote microbes had colonized and flourishedin lacustrine [lake] and other non-marine ecosystems," Shuhai Xiao, a researcher not involved in the study from Virginia Polytechnic Institute and State University, told LiveScience in an email.  "This is not trivial, as biological activities in non-marine ecosystems would have had important impact on global biogeochemical cycles."

The study was published today (April 13) in the journal Nature.

You can follow LiveScience staff writer Jennifer Welsh on Twitter @microbelover.

7 Theories on the Origin of Life 

Greatest Mysteries: How Did Life Arise on Earth? 

Extremophiles: World's Weirdest Life 

http://news.yahoo.com/s/livescience/20110413/sc_livescience/complexlifeemergedfromseaearlierthanthought



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Supernova Explosions Offer Potential Spin on Life's Origins

Charles Q. Choi, Astrobiology Magazine Contributor

A mysterious bias in the way the building blocks of proteins twist could be due to supernovas, researchers now suggest.

If correct, this could be evidence that the molecules of life weren't created on Earth, but came from elsewhere in the cosmos.

Organic molecules are often chiral, meaning they come in two versions that are mirror images of each other, much as right and left hands appear identical but possess reversed features.

Curiously, on Earth, the amino acids that form the proteins for life are virtually all "left-handed," even though it should be as easy to make one version as the other. Even more strangely, samples of certain amino acids obtained from the Murchison meteorite were mostly left-handed also, suggesting there could be a bias for left-handed amino acids throughout the rest of the cosmos.

Now researchers suggest that supernovas might be the culprits behind this mysterious effect. The key lies in the nitrogen atoms common to all amino acids, explained researcher Richard Boyd, a nuclear astrophysicist at Lawrence Livermore National Laboratory, and his colleagues.

As stars collapse right before they become supernovas, they generate an intense burst of electron antineutrinos that the researchers suggest would preferentially interact with nitrogen atoms in right-handed amino acids. All atoms possess "spin," and the handedness of an amino acid can influence how the spin of the nitrogen atoms within them align.

The antineutrinos, possessing a spin of their own, would prefer to interact with the way nitrogen atoms spin in right-handed amino acids rather than left-handed ones, since the spins of the antineutrinos and nitrogen atoms would align.

As a result, the antineutrinos would preferentially convert the nitrogen atoms in right-handed amino acids into carbon atoms. Boyd and his colleagues suggest this would result in the destruction of right-handed amino acids, leaving only the left-handed versions behind.

It might be possible to run experiments using intense neutrino sources, such as the Spallation Neutron Source at Oak Ridge National Laboratory, to test whether this effect actually occurs, Boyd added.

Supernovae also would generate electron neutrinos possessing opposite spin. This would have an effect on nitrogen atoms in left-handed amino acids, converting them into oxygen atoms. However, because this reaction requires more than four times more energy, it would occur to a much smaller degree than the antineutrinos'-right-handed amino acid reactions.

A Supernova standard

Supernovas are fairly common in the Milky Way galaxy. In a standard supernova, a star explodes after it uses up its nuclear fuel supply. These standard supernovas occur roughly once every 30 years in our galaxy.

A supernova only would destroy a very small portion of the right-handed amino acids in the neighboring molecular clouds. However, as the remaining left-handed molecules mixed throughout the galaxy, these molecules could be used in the formation of new amino acids. An initial imbalance of left-handed molecules as small as one part in 1 million or even less caused by supernovas could eventually lead to a dominance of left handed amino acids throughout space.

It is "the conspiracy of the very large, supernovae, with the very small, neutrinos, to impact something that exists on the human scale," Boyd said.

There remain a number of questions concerning this idea that Boyd and his colleagues are still investigating. For instance, after stars explode as supernovas, the remnants can form neutron stars. The powerful magnetic fields of these neutron stars could affect the molecular structures of the amino acids or their precursors, which in turn might have an impact on which handedness dominates.

If this idea proves true, the fact that virtually all the amino acids used by life on Earth are left-handed might suggest that the molecules of life were not created on this planet. Instead, they might have been born in our galaxy's molecular clouds and subsequently delivered via meteorites or included in the mixture that formed the Earth when the planets were created.

"I find it really mind-boggling that the same constraints that exist on our chemicals of life might also exist for every other entity in the universe," Boyd said. "If other entities are out there, the constraints on their chemistry appear to be sufficiently similar to ours that we may have lots of things in common with them."

Boyd and his colleagues Toshitaka Kajino and Takashi Onaka detailed their findings in the June issue of the journal Astrobiology.

http://news.yahoo.com/s/space/20100821/sc_space/supernovaexplosionsofferpotentialspinonlifesorigins



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